{
  "_id": "6ac4ef33f511ae58c09a33f3",
  "Package": "hommel",
  "Type": "Package",
  "Title": "Methods for Closed Testing with Simes Inequality, in Particular\nHommel's Method",
  "Version": "1.8",
  "Date": "2025-01-14",
  "Author": "Jelle Goeman [aut, cre], Rosa Meijer [aut], Thijmen Krebs [aut]",
  "Authors@R": "c(person(given = \"Jelle\",\nfamily = \"Goeman\",\nrole = c(\"aut\", \"cre\"),\nemail = \"j.j.goeman@lumc.nl\"),\nperson(given = \"Rosa\",\nfamily = \"Meijer\",\nrole = \"aut\"),\nperson(given = \"Thijmen\",\nfamily = \"Krebs\",\nrole = \"aut\"))",
  "Maintainer": "Jelle Goeman <j.j.goeman@lumc.nl>",
  "Description": "Provides methods for closed testing using Simes local\ntests. In particular, calculates adjusted p-values for Hommel's\nmultiple testing method, and provides lower confidence bounds\nfor true discovery proportions. A robust but more conservative\nvariant of the closed testing procedure that does not require\nthe assumption of Simes inequality is also implemented. The\nmethods have been described in detail in Goeman et al\n(Biometrika 106, 841-856, 2019).",
  "License": "GPL (>= 2)",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-06 12:44:43 UTC",
    "User": "root"
  },
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.2.9000",
  "Repository": "https://jellegoeman.r-universe.dev",
  "Date/Publication": "2025-01-14 17:31:37 UTC",
  "RemoteUrl": "https://github.com/cran/hommel",
  "RemoteRef": "HEAD",
  "RemoteSha": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
  "_user": "jellegoeman",
  "_type": "src",
  "_file": "hommel_1.8.tar.gz",
  "_fileid": "https://r2.ropensci.org/1c7bbb0ab065cce6285fb6ef72058a41ee3adc006f6ed23df8bcee639d800c33",
  "_filesize": 118701,
  "_sha256": "1c7bbb0ab065cce6285fb6ef72058a41ee3adc006f6ed23df8bcee639d800c33",
  "_expires": "2027-01-14T12:53:05.000Z",
  "_created": "2026-10-06T12:44:43.000Z",
  "_published": "2026-10-06T12:53:07.542Z",
  "_jobs": [
    {
      "job": 112275641314,
      "time": 125,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11414199596"
    },
    {
      "job": 112275641350,
      "time": 155,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11414885334"
    },
    {
      "job": 112275641396,
      "time": 87,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11414605543"
    },
    {
      "job": 112275641274,
      "time": 114,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11414875027"
    },
    {
      "job": 112275641284,
      "time": 190,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11414720478"
    },
    {
      "job": 112275641369,
      "time": 414,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11415365484"
    },
    {
      "job": 112275641294,
      "time": 153,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11414269806"
    },
    {
      "job": 112275641204,
      "time": 296,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11415015316"
    },
    {
      "job": 112274553075,
      "time": 151,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11414640107"
    },
    {
      "job": 112275641255,
      "time": 87,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11414024540"
    },
    {
      "job": 112275641493,
      "time": 425,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11415100747"
    },
    {
      "job": 112275641320,
      "time": 131,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11414655503"
    },
    {
      "job": 112275641310,
      "time": 124,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11414399381"
    },
    {
      "job": 112275641353,
      "time": 340,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11415540248"
    },
    {
      "job": 112275641397,
      "time": 110,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11413604868"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710",
  "_status": "success",
  "_upstream": "https://github.com/cran/hommel",
  "_commit": {
    "id": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
    "author": "Jelle Goeman <j.j.goeman@lumc.nl>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.8\n",
    "time": 1736875897
  },
  "_maintainer": {
    "name": "Jelle Goeman",
    "email": "j.j.goeman@lumc.nl",
    "login": "jellegoeman",
    "description": "",
    "uuid": 24312915
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 12,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "jellegoeman",
      "count": 8,
      "uuid": 24312915
    }
  ],
  "_userbio": {
    "uuid": 24312915,
    "type": "user",
    "name": "jellegoeman",
    "followers": 6
  },
  "_downloads": {
    "count": 754,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/hommel"
  },
  "_searchresults": 26,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/hommel.html",
    "extra/manual.pdf"
  ],
  "_realowner": "jellegoeman",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2017-05-16"
    },
    {
      "version": "1.1",
      "date": "2017-07-12"
    },
    {
      "version": "1.2",
      "date": "2018-11-15"
    },
    {
      "version": "1.3",
      "date": "2019-08-19"
    },
    {
      "version": "1.4",
      "date": "2019-10-02"
    },
    {
      "version": "1.5",
      "date": "2019-12-02"
    },
    {
      "version": "1.6",
      "date": "2021-12-17"
    },
    {
      "version": "1.8",
      "date": "2025-01-17"
    }
  ],
  "_exports": [
    "concentration",
    "discoveries",
    "fdp",
    "hommel",
    "localtest",
    "p.adjust",
    "show",
    "summary",
    "tdp"
  ],
  "_help": [
    {
      "page": "hommel-package",
      "title": "Methods for closed testing with Simes inequality, in particular Hommel's method",
      "topics": [
        "hommel-package"
      ]
    },
    {
      "page": "concentration-function",
      "title": "Concentration set calculation",
      "topics": [
        "concentration"
      ]
    },
    {
      "page": "hommel-function",
      "title": "Calculates adjusted p-values of Hommel's method efficiently.",
      "topics": [
        "hommel"
      ]
    },
    {
      "page": "hommel-class",
      "title": "Class \"hommel\" for storing the result of Hommel's multiple testing method.",
      "topics": [
        "hommel-class",
        "p.adjust,hommel-method",
        "show,hommel-method",
        "summary,hommel-method"
      ]
    },
    {
      "page": "localtest-function",
      "title": "P-values and adjusted p-values of local tests",
      "topics": [
        "localtest"
      ]
    },
    {
      "page": "fdp-function",
      "title": "Confidence bounds for the number of discoveries",
      "topics": [
        "discoveries",
        "fdp",
        "tdp"
      ]
    }
  ],
  "_rundeps": [
    "Rcpp"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 2.971275848738105,
  "_indexed": true,
  "_nocasepkg": "hommel",
  "_universes": [
    "jellegoeman"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.8",
      "date": "2026-10-06T12:46:55.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/e589471d76c1f78d24e73fd36f22fc29ccde0a91d80302c7271bcc28823e5bd1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.8",
      "date": "2026-10-06T12:47:26.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/632197da3fdd5a4a0873cfda3807d4efa68dd830fda60cefba1a962a50eda579",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.8",
      "date": "2026-10-06T12:46:25.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/c6704532b1d66ab797a67da28756a6a6f38e1af0ae63f3bd5c9d2cc0145dca5b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.8",
      "date": "2026-10-06T12:46:52.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/ef7951b795c42cab4f752282df783321cf32f04440bca01a6d2c1e828f8b9cd4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.8",
      "date": "2026-10-06T12:47:34.000Z",
      "arch": "aarch64",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/cc952deff21026c21a601139c0cfe474816fcf42cc7964c49d0d0d6e67e7edc5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.8",
      "date": "2026-10-06T12:50:11.000Z",
      "arch": "x86_64",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/cf219c4bcbddc7f25e07a1781c4a8ff3a97d8066a54c87b4da2b7f794a80bd51",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.8",
      "date": "2026-10-06T12:47:05.000Z",
      "arch": "aarch64",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/40d1cfb6e13f5965880d122f889a6111cda0ae0cbeb345aa6fc79501a0eaa59b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.8",
      "date": "2026-10-06T12:48:47.000Z",
      "arch": "x86_64",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/3e09e87c9ccc83914a7e35d009837de7a6cf18cdfb34e8f55fe4242a67203acd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.8",
      "date": "2026-10-06T12:46:39.000Z",
      "arch": "emscripten",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/9607714705408ddf0bddd6f3344e8d1425923236da28c509ab687e631269403b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.8",
      "date": "2026-10-06T12:51:19.000Z",
      "arch": "aarch64",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/d05bc4655253bbe98771eaf4adf1580fc34133b7f077354c73feecfb1f043c0a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.8",
      "date": "2026-10-06T12:46:10.000Z",
      "arch": "x86_64",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/f3b54d5a5858ac7e08cc3e7e494ec9aaf15586ae40e2c79dfff1ea37050d8537",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.8",
      "date": "2026-10-06T12:46:18.000Z",
      "arch": "x86_64",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/47445314ba611e9449aa3fcdddccfc95a1c2c9b090eb8d37d9eefc05b90af748",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.8",
      "date": "2026-10-06T12:49:45.000Z",
      "arch": "aarch64",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/c2c4f9f3c62352d703bbc922b01718e25982dbfc4f9ef9fc13c1ba52d3593ffb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.8",
      "date": "2026-10-06T12:46:06.000Z",
      "arch": "x86_64",
      "commit": "7bba4e3ddb1284f9b2e8594b9bb2e4ec229cbf5a",
      "fileid": "https://r2.ropensci.org/b5f1ee12d9eec85f610b47ab977c778efe3a6316042ca167f5ae60dcb7616167",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jellegoeman/actions/runs/37465212710"
    }
  ]
}