Package: cherry 0.6-15

cherry: Multiple Testing Methods for Exploratory Research

Provides an alternative approach to multiple testing by calculating a simultaneous upper confidence bounds for the number of true null hypotheses among any subset of the hypotheses of interest, using the methods of Goeman and Solari (2011) <doi:10.1214/11-STS356>.

Authors:Jelle Goeman [aut, cre], Aldo Solari [aut], Rosa Meijer [aut]

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DESCRIPTION
card.svg |card.png
cherry/json (API)

# Install 'cherry' in R:

install.packages('cherry', repos = c('https://jellegoeman.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

NAEP - National Assessment of Educational Progress (NAEP) p-values

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.65 score 5 packages 30 scripts 501 downloads 1 mentions 28 exports 4 dependencies

Last updated from:166256bc55. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	108
source / vignettes	OK	149
linux-release	OK	127
macos-release	OK	103
macos-oldrel	OK	90
windows-devel	OK	120
windows-release	OK	72
windows-oldrel	OK	78
wasm-release	OK	92

Exports:adjusted alpha alpha<-closed construct curveFisher curveMeinshausen curveSimes DAGmethod DAGpick defining hommelFast hypotheses implications istwoway pick pickFisher pickMeinshausen pickSimes pvalue regionmethod regionpick regionplot regionplot2 shortlist show structuredHolm summary

Dependencies:bitops hommel lpSolve Rcpp

cherry

Rendered fromcherry.Rnwusingutils::Sweave

Last update: 2015-06-19
Started: 2012-04-04

Citation

Readme and manuals

Help Manual

Help page	Topics
Adjusted p-values for the number of true hypotheses.	adjusted
Closed Testing for Exploratory Research	closed
Class "closure" for storing the result of the closed testing procedure	alpha alpha,closure-method alpha<- alpha<-,closure-method closure closure-class defining defining,closure-method hypotheses hypotheses,closure-method shortlist shortlist,closure-method show,closure-method summary,closure-method
Constructing a DAG.	construct
Class "DAG" for storing the result of the DAG multiple testing method	alpha,DAG-method DAG DAG-class implications,DAG-method pvalue,DAG-method show,DAG-method summary,DAG-method
Testing of hypotheses, forming a DAG.	DAGmethod
Confidence limits for the number of false hypotheses in a given family of sets.	DAGpick
Class "DAGstructure" for storing the result of the construct method that constructs the DAG.	DAGstructure DAGstructure-class istwoway istwoway,DAGstructure-method
Calculates adjusted p-values of Hommel's method efficiently.	hommelFast
National Assessment of Educational Progress (NAEP) p-values	NAEP
Confidence limits for the number of true hypotheses.	pick
Visualizing of the region hypotheses that could be rejected.	regionplot regionplot2
Class "region" for storing the result of the region procedure	alpha,region-method implications implications,region-method pvalue pvalue,region-method region region-class show,region-method summary,region-method
Testing of all possible region hypotheses	regionmethod
Confidence limits for the number of false hypotheses in a given region.	regionpick
Confidence limits for the number of true hypotheses, with shortcuts.	curveFisher curveMeinshausen curveSimes pickFisher pickMeinshausen pickSimes
Testing of hypotheses, forming a DAG, by using a variant of Holm's method.	structuredHolm

Package: cherry 0.6-15

cherry: Multiple Testing Methods for Exploratory Research

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)