Package: cherry 0.6-14

cherry: Multiple Testing Methods for Exploratory Research

Provides an alternative approach to multiple testing by calculating a simultaneous upper confidence bounds for the number of true null hypotheses among any subset of the hypotheses of interest, using the methods of Goeman and Solari (2011) <doi:10.1214/11-STS356>.

Authors:Jelle Goeman, Aldo Solari, Rosa Meijer

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# Install 'cherry' in R:
install.packages('cherry', repos = c('https://jellegoeman.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • NAEP - National Assessment of Educational Progress (NAEP) p-values

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.42 score 3 packages 29 scripts 387 downloads 1 mentions 28 exports 4 dependencies

Last updated 4 years agofrom:dfc9cd791b. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-winNOTENov 18 2024
R-4.5-linuxNOTENov 18 2024
R-4.4-winOKNov 18 2024
R-4.4-macOKNov 18 2024
R-4.3-winOKNov 18 2024
R-4.3-macOKNov 18 2024

Exports:adjustedalphaalpha<-closedconstructcurveFishercurveMeinshausencurveSimesDAGmethodDAGpickdefininghommelFasthypothesesimplicationsistwowaypickpickFisherpickMeinshausenpickSimespvalueregionmethodregionpickregionplotregionplot2shortlistshowstructuredHolmsummary

Dependencies:bitopshommellpSolveRcpp

cherry

Rendered fromcherry.Rnwusingutils::Sweaveon Nov 18 2024.

Last update: 2015-06-19
Started: 2012-04-04

Readme and manuals

Help Manual

Help pageTopics
Adjusted p-values for the number of true hypotheses.adjusted
Closed Testing for Exploratory Researchclosed
Class "closure" for storing the result of the closed testing procedurealpha alpha,closure-method alpha<- alpha<-,closure-method closure closure-class defining defining,closure-method hypotheses hypotheses,closure-method shortlist shortlist,closure-method show,closure-method summary,closure-method
Constructing a DAG.construct
Class "DAG" for storing the result of the DAG multiple testing methodalpha,DAG-method DAG DAG-class implications,DAG-method pvalue,DAG-method show,DAG-method summary,DAG-method
Testing of hypotheses, forming a DAG.DAGmethod
Confidence limits for the number of false hypotheses in a given family of sets.DAGpick
Class "DAGstructure" for storing the result of the construct method that constructs the DAG.DAGstructure DAGstructure-class istwoway istwoway,DAGstructure-method
Calculates adjusted p-values of Hommel's method efficiently.hommelFast
National Assessment of Educational Progress (NAEP) p-valuesNAEP
Confidence limits for the number of true hypotheses.pick
Visualizing of the region hypotheses that could be rejected.regionplot regionplot2
Class "region" for storing the result of the region procedurealpha,region-method implications implications,region-method pvalue pvalue,region-method region region-class show,region-method summary,region-method
Testing of all possible region hypothesesregionmethod
Confidence limits for the number of false hypotheses in a given region.regionpick
Confidence limits for the number of true hypotheses, with shortcuts.curveFisher curveMeinshausen curveSimes pickFisher pickMeinshausen pickSimes
Testing of hypotheses, forming a DAG, by using a variant of Holm's method.structuredHolm